Calificación MotoGP - Gran Premio de Malasia 2009
| Pos. |
Piloto |
Equipo |
Moto |
Tiempo |
| 1 |
Valentino Rossi |
Fiat Yamaha Team |
Yamaha |
2:00.518 |
| 2 |
Jorge Lorenzo |
Fiat Yamaha Team |
Yamaha |
+0.569 |
| 3 |
Dani Pedrosa |
Repsol Honda Team |
Honda |
+0.736 |
| 4 |
Casey Stoner |
Ducati Marlboro Team |
Ducati |
+0.937 |
| 5 |
Loris Capirossi |
Rizla Suzuki MotoGP |
Suzuki |
+1.198 |
| 6 |
Toni Elías |
|
|
+1.400 |
| 7 |
Nicky Hayden |
Ducati Marlboro Team |
Ducati |
+1.462 |
| 8 |
Randy De Puniet |
LCR Honda MotoGP |
Honda |
+1.580 |
| 9 |
Colin Edwards |
Monster Yamaha Tech 3 |
Yamaha |
+1.677 |
| 10 |
Alex De Angelis |
|
|
+1.756 |
| 11 |
Andrea Dovizioso |
Repsol Honda Team |
Honda |
+1.844 |
| 12 |
Mika Kallio |
Pramac Racing |
Ducati |
+1.917 |
| 13 |
Aleix Espargaró |
Pramac Racing |
Ducati |
+2.341 |
| 14 |
Chris Vermeulen |
Rizla Suzuki MotoGP |
Suzuki |
+2.514 |
| 15 |
Marco Melandri |
Hayate Racing Team |
Kawasaki |
+2.570 |
| 16 |
James Toseland |
Monster Yamaha Tech 3 |
Yamaha |
+3.010 |
| 17 |
Gabor Talmacsi |
Scot Racing Team |
Honda |
+3.356 |