Calificación MotoGP - Gran Premio de San Marino 2013
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Marc Márquez |
Repsol Honda Team | Honda | 1:32.915 |
| 2 |
Jorge Lorenzo |
Yamaha Factory Racing | Yamaha | +0.513 |
| 3 | 
Valentino Rossi |
Yamaha Factory Racing | Yamaha | +0.658 |
| 4 |
Dani Pedrosa |
Repsol Honda Team | Honda | +0.811 |
| 5 | 
Cal Crutchlow |
Monster Yamaha Tech 3 | Yamaha | +1.099 |
| 6 |
Aleix Espargaró |
Power Electronics Aspar | Aprilia | +1.113 |
| 7 | 
Stefan Bradl |
LCR Honda MotoGP | Honda | +1.183 |
| 8 |
Alvaro Bautista |
GO&FUN Honda Gresini | Honda | +1.315 |
| 9 |
Andrea Dovizioso |
Ducati Team | Ducati | +1.423 |
| 10 | 
Nicky Hayden |
Ducati Team | Ducati | +1.447 |
| 11 |
Michele Pirro |
Ignite Pramac Racing | Ducati | +1.552 |
| 12 |
Andrea Iannone |
Pramac Racing Team | Ducati | +1.604 |
| Q2 | ||||
| 1 |
Michele Pirro |
Ignite Pramac Racing | Ducati | 1:34.678 |
| 2 |
Cal Crutchlow |
Monster Yamaha Tech 3 | Yamaha | +0.016 |
| 3 | 
Bradley Smith |
Monster Yamaha Tech 3 | Yamaha | +0.191 |
| 4 |
Colin Edwards |
NGM Mobile Forward Racing | Suter | +0.496 |
| 5 | 
Hiroshi Aoyama |
Avintia Blusens | FTR | +0.856 |
| 6 | 
Randy De Puniet |
Power Electronics Aspar | Aprilia | +0.918 |
| 7 |
Héctor Barberá |
Avintia Blusens | FTR | +1.188 |
| 8 |
Claudio Corti |
NGM Mobile Forward Racing | Suter | +1.207 |
| 9 |
Danilo Petrucci |
Came IodaRacing Project | FTR | +1.349 |
| 10 |
Michael Laverty |
Paul Bird Motorsport | ART-Aprilia | +2.110 |
| 11 | 
Yonny Hernandez |
Paul Bird Motorsport | ART-Aprilia | +2.166 |
| 12 | 
Karel Abraham |
Cardion AB Motoracing | Aprilia | +2.199 |
| 13 | 
Bryan Staring |
GO&FUN Honda Gresini | Honda | +2.605 |
| 14 |
Lukas Pesek |
Came IodaRacing Project | FTR | +3.208 |