Calificación MotoGP - Gran Premio de Malasia 2013
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Marc Márquez |
Repsol Honda Team | Honda | 2:00.011 |
| 2 | 
Valentino Rossi |
Yamaha Factory Racing | Yamaha | +0.325 |
| 3 | 
Cal Crutchlow |
Monster Yamaha Tech 3 | Yamaha | +0.348 |
| 4 |
Jorge Lorenzo |
Yamaha Factory Racing | Yamaha | +0.567 |
| 5 |
Dani Pedrosa |
Repsol Honda Team | Honda | +0.681 |
| 6 |
Alvaro Bautista |
GO&FUN Honda Gresini | Honda | +0.963 |
| 7 | 
Bradley Smith |
Monster Yamaha Tech 3 | Yamaha | +1.295 |
| 8 |
Andrea Dovizioso |
Ducati Team | Ducati | +1.624 |
| 9 |
Aleix Espargaró |
Power Electronics Aspar | Aprilia | +2.140 |
| 10 |
Andrea Iannone |
Pramac Racing Team | Ducati | +2.525 |
| 11 | 
Nicky Hayden |
Ducati Team | Ducati | +2.889 |
| 12 | 
Stefan Bradl |
LCR Honda MotoGP | Honda | +0.000 |
| Q2 | ||||
| 1 |
Andrea Iannone |
Pramac Racing Team | Ducati | 2:02.326 |
| 2 |
Aleix Espargaró |
Power Electronics Aspar | Aprilia | +0.306 |
| 3 |
Colin Edwards |
NGM Mobile Forward Racing | Suter | +0.532 |
| 4 |
Claudio Corti |
NGM Mobile Forward Racing | Suter | +0.849 |
| 5 |
Héctor Barberá |
Avintia Blusens | FTR | +0.886 |
| 6 | 
Hiroshi Aoyama |
Avintia Blusens | FTR | +1.092 |
| 7 | 
Yonny Hernandez |
Paul Bird Motorsport | ART-Aprilia | +1.325 |
| 8 | 
Randy De Puniet |
Power Electronics Aspar | Aprilia | +1.479 |
| 9 |
Michael Laverty |
Paul Bird Motorsport | ART-Aprilia | +1.872 |
| 10 |
Danilo Petrucci |
Came IodaRacing Project | FTR | +1.984 |
| 11 |
Luca Scassa |
Cardion AB Motoracing | Aprilia | +2.873 |
| 12 | 
Bryan Staring |
GO&FUN Honda Gresini | Honda | +3.712 |
| 13 | 
Lukas Pesek |
Came IodaRacing Project | FTR | +3.877 |
| 14 |
Damian Cudlin |
Paul Bird Motorsport | ART-Aprilia | +3.947 |