Calificación 125cc - Gran Premio de Francia 2009
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Marc Márquez |
Red Bull KTM Motosport | KTM | 1:47.080 |
| 2 | 
Scott Redding |
Blusens Aprilia | Aprilia | +0.093 |
| 3 |
Nicolás Terol |
Jack & Jones Team | Aprilia | +0.703 |
| 4 | 
Dominique Aegerter |
Ajo Interwetten | Derbi | +0.915 |
| 5 |
Joan Olivé |
Derbi Racing Team | Derbi | +1.005 |
| 6 |
Bradley Smith |
Bancaja Aspar Team | Aprilia | +1.035 |
| 7 |
Julián Simón |
Bancaja Aspar Team | Aprilia | +1.254 |
| 8 | 
Stefan Bradl |
Viessmann Kiefer Racing | Aprilia | +1.428 |
| 9 | 
Tomoyoshi Koyama |
Loncin Racing | Loncin | +2.233 |
| 10 |
Danny Webb |
Degraaf Grand Prix | Aprilia | +2.359 |
| 11 | 
Cameron Beaubier |
Red Bull KTM Motosport | KTM | +2.615 |
| 12 |
Sergio Gadea |
Bancaja Aspar Team | Aprilia | +3.159 |
| 13 |
Tito Rabat |
Blusens Aprilia | Aprilia | +3.518 |
| 14 | 
Alexis Masbou |
Loncin Racing | Loncin | +3.612 |
| 15 |
Pol Espargaró |
Derbi Racing Team | Derbi | +3.681 |
| 16 |
Jonas Folger |
Ongetta Team I.S.P.A. | Aprilia | +3.921 |
| 17 |
Randy Krummenacher |
Degraaf Grand Prix | Aprilia | +4.350 |
| 18 | 
Lukas Sembera |
WTR San Marino Team | Aprilia | +4.732 |
| 19 | 
Simone Corsi |
Jack & Jones Team | Aprilia | +4.948 |
| 20 |
Lorenzo Zanetti |
Ongetta Team I.S.P.A. | Aprilia | +5.363 |
| 21 |
Lorenzo Savadori |
Fontana Racing | Aprilia | +5.604 |
| 22 |
Steven Le Coquen |
Villiers Team Competition | Honda | +6.145 |
| 23 |
Andrea Iannone |
Ongetta Team I.S.P.A. | Aprilia | +6.499 |
| 24 |
Sandro Cortese |
Ajo Interwetten | Derbi | +7.424 |
| 25 |
Efrén Vazquez |
Derbi Racing Team | Derbi | +7.560 |
| 26 |
Luca Marconi |
CBC Corse | Aprilia | +7.713 |
| 27 |
Cyril Carrillo |
TJP-TVX Racing | Honda | +8.233 |
| 28 |
Gregory Di Carlo |
Equipe de France | Honda | +9.352 |
| 29 |
Luca Vitali |
CBC Corse | Aprilia | +9.625 |
| 30 | 
Michael Ranseder |
Haojue Team | Haojue | +9.766 |
| 31 | 
Jasper Iwema |
WTR San Marino Team | Aprilia | +10.727 |
| 32 |
Ornella Ongaro |
Xtrem Racing Team | Honda | +11.178 |
| 33 |
Takaaki Nakagami |
Ongetta Team I.S.P.A. | Aprilia | +11.802 |
| 34 |
Johann Zarco |
WTR San Marino Team | Aprilia | +12.082 |
| 35 |
Matthew Hoyle |
Haojue Team | Haojue | +14.377 |
| 36 | 
Sturla Fagerhaug |
Red Bull KTM Motosport | KTM | +16.688 |