Carrera 250cc - Gran Premio de San Marino 2009
| Pos. | Piloto | Equipo | Moto | Tiempo | Pts. |
|---|---|---|---|---|---|
| 1 | 
Héctor Barberá |
Pepe World Team | Aprilia | 43:23.353 | 25 |
| 2 | 
Mattia Pasini |
Team Toth Aprilia | Aprilia | +0.040 | 20 |
| 3 |
Alvaro Bautista |
Mapfre Aspar Team | Aprilia | +1.691 | 16 |
| 4 | 
Hiroshi Aoyama |
Scot Racing Team | Honda | +1.697 | 13 |
| 5 | 
Mike Di Meglio |
+1.921 | 11 | ||
| 6 |
Jules Cluzel |
Matteoni Racing | Aprilia | +9.202 | 10 |
| 7 |
Alex Debón |
Aeropuerto-Castello-Blusens | Aprilia | +10.483 | 9 |
| 8 |
Raffaele De Rosa |
Scot Racing Team | Honda | +11.360 | 8 |
| 9 |
Héctor Faubel |
Thai Honda PTT SAG | Honda | +18.953 | 7 |
| 10 | 
Thomas Lüthi |
Emmi - Caffe Latte | Aprilia | +24.480 | 6 |
| 11 | 
Karel Abraham |
Cardion AB Motoracing | Aprilia | +24.680 | 5 |
| 12 |
Shoya Tomizawa |
CIP Moto | Honda | +51.521 | 4 |
| 13 |
Alex Baldolini |
WTR San Marino Team | Aprilia | +52.474 | 3 |
| 14 |
Valentin Debise |
CIP Moto | Honda | +1:11.675 | 2 |
| 16 |
Axel Pons |
Pepe World Team | Aprilia | +1:15.666 | 0 |
| 17 | 
Vladimir Leonov |
Viessmann Kiefer Racing | Aprilia | 1 Vuelta | 0 |
| 18 | 
Imre Toth |
Team Toth Aprilia | Aprilia | 1 Vuelta | 0 |
| 19 |
Aitor Rodríguez |
Milar - Juegos Lucky | Aprilia | 1 Vuelta | 0 |
| 20 | 
Ratthapark Wilairot |
Thai Honda PTT SAG | Honda | 5 Vueltas | 0 |
| 21 |
Roberto Locatelli |
Metis Gilera | Gilera | 6 Vueltas | 0 |
| 22 | 
Toby Markham |
C&L Racing | Honda | 11 Vueltas | 0 |
| 23 |
Marco Simoncelli |
Metis Gilera | Gilera | 14 Vueltas | 0 |
| 24 |
Bastien Chesaux |
Racing Team Germany | Honda | 23 Vueltas | 0 |
| 25 |
Lukas Pesek |
Auto Kelly - CP | Aprilia | 24 Vueltas | 0 |