Calificación MotoGP - Gran Premio de Malasia 2012
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Jorge Lorenzo |
Yamaha Factory Racing | Yamaha | 2:00.334 |
| 2 |
Dani Pedrosa |
Repsol Honda Team | Honda | +0.194 |
| 3 | 
Andrea Dovizioso |
Monster Yamaha Tech 3 | Yamaha | +0.233 |
| 4 | 
Casey Stoner |
Repsol Honda Team | Honda | +0.477 |
| 5 | 
Cal Crutchlow |
Monster Yamaha Tech 3 | Yamaha | +0.844 |
| 6 | 
Ben Spies |
Yamaha Factory Racing | Yamaha | +0.851 |
| 7 |
Héctor Barberá |
Pramac Racing Team | Ducati | +0.960 |
| 8 | 
Stefan Bradl |
LCR Honda MotoGP | Honda | +1.157 |
| 9 |
Nicky Hayden |
Ducati Team | Ducati | +1.192 |
| 10 |
Alvaro Bautista |
San Carlo Honda Gresini | Honda | +1.306 |
| 11 |
Valentino Rossi |
Ducati Team | Ducati | +1.449 |
| 12 |
Aleix Espargaró |
Power Electronics Aspar | ART | +2.508 |
| 13 | 
Randy De Puniet |
Power Electronics Aspar | ART | +3.055 |
| 14 | 
Karel Abraham |
Cardion AB Motoracing | Ducati | +3.440 |
| 15 |
Michele Pirro |
San Carlo Honda Gresini | Honda | +3.818 |
| 16 | 
James Ellison |
Paul Bird Motorsport | ART | +4.181 |
| 17 |
Danilo Petrucci |
Came IodaRacing Project | Ioda | +4.392 |
| 18 |
Colin Edwards |
NGM Mobile Forward Racing | Suter | +4.607 |
| 19 |
Roberto Rolfo |
Speed Master | ART | +4.766 |
| 20 |
Ivan Silva |
Avintia Blusens | BQR-FTR | +5.587 |
| 21 | 
Yonny Hernandez |
Avintia Blusens | BQR-FTR | +0.000 |