Calificación MotoGP - Gran Premio de San Marino 2012
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Dani Pedrosa |
Repsol Honda Team | Honda | 1:33.857 |
| 2 |
Jorge Lorenzo |
Yamaha Factory Racing | Yamaha | +0.018 |
| 3 | 
Cal Crutchlow |
Monster Yamaha Tech 3 | Yamaha | +0.144 |
| 4 | 
Stefan Bradl |
LCR Honda MotoGP | Honda | +0.364 |
| 5 |
Alvaro Bautista |
San Carlo Honda Gresini | Honda | +0.442 |
| 6 | 
Valentino Rossi |
Ducati Team | Ducati | +0.762 |
| 7 |
Andrea Dovizioso |
Monster Yamaha Tech 3 | Yamaha | +1.059 |
| 8 | 
Ben Spies |
Yamaha Factory Racing | Yamaha | +1.131 |
| 9 | 
Jonathan Rea |
Repsol Honda Team | Honda | +1.501 |
| 10 |
Nicky Hayden |
Ducati Team | Ducati | +1.544 |
| 11 | 
Karel Abraham |
Cardion AB Motoracing | Ducati | +1.791 |
| 12 | 
Randy De Puniet |
Power Electronics Aspar | ART | +1.899 |
| 13 |
Héctor Barberá |
Pramac Racing Team | Ducati | +2.191 |
| 14 |
Aleix Espargaró |
Power Electronics Aspar | ART | +2.427 |
| 15 |
Michele Pirro |
San Carlo Honda Gresini | Honda | +2.483 |
| 16 |
James Ellison |
Paul Bird Motorsport | ART | +3.267 |
| 17 |
Mattia Pasini |
Speed Master | ART | +3.305 |
| 18 | 
Yonny Hernandez |
Avintia Blusens | BQR-FTR | +3.459 |
| 19 |
Danilo Petrucci |
Came IodaRacing Project | Ioda | +3.894 |
| 20 |
Colin Edwards |
NGM Mobile Forward Racing | Suter | +4.211 |
| 21 |
Davis Salom |
Avintia Blusens | BQR-FTR | +6.218 |