Calificación Moto3 - Gran Premio de Comunidad Valenciana 2016
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Arón Canet |
Estrella Galicia 0,0 | Honda | 1:39.261 |
| 2 | 
Brad Binder |
Red Bull KTM Ajo | KTM | +0.018 |
| 3 | 
Hiroki Ono |
Honda Team Asia | Honda | +0.122 |
| 4 | 
Nicolo Bulega |
SKY Racing Team VR46 | KTM | +0.159 |
| 5 |
Juanfran Guevara |
RBA Racing Team | KTM | +0.202 |
| 6 |
Niccolo Antonelli |
Ongetta-Rivacold | Honda | +0.263 |
| 7 | 
Philipp Oettl |
Schedl GP Racing | KTM | +0.291 |
| 8 | 
Bo Bendsneyder |
Red Bull KTM Ajo | KTM | +0.292 |
| 9 |
Enea Bastianini |
Gresini Racing Moto3 | Honda | +0.298 |
| 10 |
Joan Mir |
Leopard Racing | KTM | +0.316 |
| 11 |
Lorenzo Dalla Porta |
SKY Racing Team VR46 | KTM | +0.345 |
| 12 |
Fabio Di Giannantonio |
Gresini Racing Moto3 | Honda | +0.355 |
| 13 | 
Karel Hanika |
Platinum Bay Real Estate | Mahindra | +0.399 |
| 14 | 
Gabriel Rodrigo |
RBA Racing Team | KTM | +0.401 |
| 15 |
Adrián Martín |
MAPFRE Team MAHINDRA | Mahindra | +0.401 |
| 16 |
Francesco Bagnaia |
ASPAR Mahindra Team Moto3 | Mahindra | +0.475 |
| 17 |
Jorge Navarro |
Estrella Galicia 0,0 | Honda | +0.532 |
| 18 |
Andrea Migno |
SKY Racing Team VR46 | KTM | +0.533 |
| 19 |
Raúl Fernández |
MH6 Team | KTM | +0.574 |
| 20 | 
Livio Loi |
RW Racing GP BV | Honda | +0.577 |
| 21 |
Vicente Pérez |
Peugeot MC Saxoprint | Peugeot | +0.650 |
| 22 |
Tatsuki Suzuki |
CIP | Mahindra | +0.664 |
| 23 | 
Fabio Quartararo |
Leopard Racing | KTM | +0.666 |
| 24 |
Jakub Kornfeil |
Drive M7 SIC Racing Team | Honda | +0.736 |
| 25 | 
Khairul Idham Pawi |
Honda Team Asia | Honda | +0.902 |
| 26 |
Albert Arenas |
Peugeot MC Saxo | Albert Arenas | +0.975 |
| 27 |
Andrea Locatelli |
Leopard Racing | KTM | +1.000 |
| 28 |
Jules Danilo |
Ongetta-Rivacold | Honda | +1.039 |
| 29 |
Darryn Binder |
Platinum Bay Real Estate | Mahindra | +1.088 |
| 30 |
Adam Norrodin |
Drive M7 SIC Racing Team | Honda | +1.696 |
| 31 |
Daniel Saez |
GA Competicion | KTM | +2.398 |
| 33 |
Lorenzo Petrarca |
3570 Team Italia | Stefano Valtulini | +3.183 |
| 34 |
Stefano Valtulini |
3570 Team Italia | Stefano Valtulini | +3.376 |
| 35 |
Marcos Ramírez |
Platinum Bay Real Estate | Mahindra | +4.205 |